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Database MCP servers let an agent inspect schemas and run the queries you allow. Rankings use the published trust score: registry listing, license, maintenance, popularity, docs, and security signals. Filtered to servers Claude Desktop can run. 754 published MCP servers match this ranking that Claude Desktop can run. The highest trust scores right now are ensembl-mcp-server at 71, RTFM at 70, sqlite-graph-memory at 68. The order is the published trust score: registry record, license, maintenance, popularity, documentation, and security signals. Featured slots, when an editor sets them, are labeled and do not change the score. Best database MCP servers for Claude Desktop is not a paid placement.
Every server that matches this ranking, ordered by trust score.
by cyanheads · TypeScript
Look up genes, sequences, variants, homologs, and cross-database xrefs from Ensembl REST.
by roomi-fields · Python
Local retrieval for AI agents: index code, docs, PDFs, data in SQLite; 24 parsers, served via MCP.
by tonydzi · Python
Recall over your markdown notes: vector search plus your [[wikilinks]] as a graph, in SQLite.
by smaniches · Python
MCP server for AlphaFold and 8 other biomedical data sources with a local SQLite knowledge graph
by pipeworx-io · TypeScript
CFPB MCP — Consumer Financial Protection Bureau complaint database (free, no auth)
by pipeworx-io · TypeScript
Bank of England Interactive Statistical Database (IADB) MCP.
MCP server for interacting with the Supabase platform
by bvisible · JavaScript
SSH server management for agents, with per-server read-only and allowlist security modes
by pipeworx-io · TypeScript
AI Incident Database (AIID) MCP
MCP Toolbox for Databases enables your agent to connect to your database.
by awkoy · TypeScript
Token-auth Notion MCP: pages, databases, blocks, comments, files. Runs headless in CI and agents.
Offline PostgreSQL query, migration and EXPLAIN diagnostics for AI agents.
Control AutoCAD with AI: commands, read/edit/write drawing database, AutoLISP, scripts, PDF plots.
Natural language interface designed for agentic applications to manage and search data in Redis.
by kitfunso · TypeScript
Make your agent's memory work like a brain. Hippo is long-term memory for coding agents.
by malloydata · TypeScript
An open source MCP and REST server for Malloy semantic models, so AI agents, applications, and BI tools query one governed model instead…
Deterministic security layer your AI can't be. 606 rules, 39 tools, CLI + doctor + host audit.
Connect AI assistants to openLCA. 35 tools for database search, model building, and LCIA.
Use this MCP server to VNDB, the Visual Novel Database. Search VNs, characters, releases, tags,...
Every KnowBe4 KMSAT reporting feature plus a local SQLite store that answers the cross-client
Every Tactical RMM endpoint as a typed command, plus an offline SQLite mirror and cross-entity
Ask a local SQLite mirror of your Jira and Confluence: SQL, full-text search, issue detail.
Unknown author
Publish apps from Claude Code, Codex or Cursor to your team, behind sign-in, with a database.
Share a folder of data files read-only over MCP, and fill it from PostgreSQL under a read-only role.