ensembl-mcp-server
by cyanheads · TypeScript
Look up genes, sequences, variants, homologs, and cross-database xrefs from Ensembl REST.
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Database MCP servers let an agent inspect schemas and run the queries you allow. Rankings use the published trust score: registry listing, license, maintenance, popularity, docs, and security signals. Filtered to servers Continue can run. 754 published MCP servers match this ranking that Continue can run. The highest trust scores right now are ensembl-mcp-server at 71, RTFM at 70, sqlite-graph-memory at 68. The order is the published trust score: registry record, license, maintenance, popularity, documentation, and security signals. Featured slots, when an editor sets them, are labeled and do not change the score. Best database MCP servers for Continue is not a paid placement.
Every server that matches this ranking, ordered by trust score.
by cyanheads · TypeScript
Look up genes, sequences, variants, homologs, and cross-database xrefs from Ensembl REST.
by roomi-fields · Python
Local retrieval for AI agents: index code, docs, PDFs, data in SQLite; 24 parsers, served via MCP.
by tonydzi · Python
Recall over your markdown notes: vector search plus your [[wikilinks]] as a graph, in SQLite.
by smaniches · Python
MCP server for AlphaFold and 8 other biomedical data sources with a local SQLite knowledge graph
by pipeworx-io · TypeScript
CFPB MCP — Consumer Financial Protection Bureau complaint database (free, no auth)
by pipeworx-io · TypeScript
Bank of England Interactive Statistical Database (IADB) MCP.
MCP server for interacting with the Supabase platform
by bvisible · JavaScript
SSH server management for agents, with per-server read-only and allowlist security modes
by pipeworx-io · TypeScript
AI Incident Database (AIID) MCP
MCP Toolbox for Databases enables your agent to connect to your database.
by awkoy · TypeScript
Token-auth Notion MCP: pages, databases, blocks, comments, files. Runs headless in CI and agents.
Control AutoCAD with AI: commands, read/edit/write drawing database, AutoLISP, scripts, PDF plots.
Offline PostgreSQL query, migration and EXPLAIN diagnostics for AI agents.
Natural language interface designed for agentic applications to manage and search data in Redis.
by kitfunso · TypeScript
Make your agent's memory work like a brain. Hippo is long-term memory for coding agents.
by malloydata · TypeScript
An open source MCP and REST server for Malloy semantic models, so AI agents, applications, and BI tools query one governed model instead…
Deterministic security layer your AI can't be. 606 rules, 39 tools, CLI + doctor + host audit.
Query your Apple Health data from your own Supabase/Postgres via local MCP.
Read-only access to a self-hosted GeoLens spatial catalog: datasets, features, maps, sandboxed SQL.

Full Pipedrive CRUD plus a local SQLite pipeline copy: stale deals, forecasts, aging, dupes, rep
Read-only MySQL access, with the database and server switchable mid-conversation.
AI-safe credential broker for MCP — run saved SSH/MySQL/psql aliases; passwords never reach AI.
In-process MCP server for Tauri apps: DOM, IPC with bodies, Rust state, SQLite. Debug builds only.
Embedded graph database for agents: declare association rules once, edges maintain themselves.