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Database MCP servers let an agent inspect schemas and run the queries you allow. Rankings use the published trust score: registry listing, license, maintenance, popularity, docs, and security signals. Filtered to servers Zed can run. 538 published MCP servers match this ranking that Zed can run. The highest trust scores right now are ensembl-mcp-server at 71, RTFM at 70, sqlite-graph-memory at 68. The order is the published trust score: registry record, license, maintenance, popularity, documentation, and security signals. Featured slots, when an editor sets them, are labeled and do not change the score. Best database MCP servers for Zed is not a paid placement.
Every server that matches this ranking, ordered by trust score.
by cyanheads · TypeScript
Look up genes, sequences, variants, homologs, and cross-database xrefs from Ensembl REST.
by roomi-fields · Python
Local retrieval for AI agents: index code, docs, PDFs, data in SQLite; 24 parsers, served via MCP.
by tonydzi · Python
Recall over your markdown notes: vector search plus your [[wikilinks]] as a graph, in SQLite.
by smaniches · Python
MCP server for AlphaFold and 8 other biomedical data sources with a local SQLite knowledge graph
by pipeworx-io · TypeScript
CFPB MCP — Consumer Financial Protection Bureau complaint database (free, no auth)
by pipeworx-io · TypeScript
Bank of England Interactive Statistical Database (IADB) MCP.
MCP server for interacting with the Supabase platform
by bvisible · JavaScript
SSH server management for agents, with per-server read-only and allowlist security modes
by pipeworx-io · TypeScript
AI Incident Database (AIID) MCP
MCP Toolbox for Databases enables your agent to connect to your database.
by awkoy · TypeScript
Token-auth Notion MCP: pages, databases, blocks, comments, files. Runs headless in CI and agents.
Control AutoCAD with AI: commands, read/edit/write drawing database, AutoLISP, scripts, PDF plots.
Offline PostgreSQL query, migration and EXPLAIN diagnostics for AI agents.
Natural language interface designed for agentic applications to manage and search data in Redis.
by kitfunso · TypeScript
Make your agent's memory work like a brain. Hippo is long-term memory for coding agents.
by malloydata · TypeScript
An open source MCP and REST server for Malloy semantic models, so AI agents, applications, and BI tools query one governed model instead…
Deterministic security layer your AI can't be. 606 rules, 39 tools, CLI + doctor + host audit.
Unknown author
Publish apps from Claude Code, Codex or Cursor to your team, behind sign-in, with a database.
Lints SQL and checks rewrites return the same rows. Postgres, MySQL, MariaDB, SQLite, MSSQL, DuckDB
Every Sherweb Partner API capability, plus a local SQLite store, offline analytics, and
Unknown author
Generate referentially intact, distribution-realistic PostgreSQL synthetic data from AI assistants.
Read-only SQL Server diagnostics for LLM agents: Query Store, waits, plans, indexes
Open item database and MCP server for AI agents to list, find, and trade second-hand goods.