How do I install Mass Spectrometry Data (mzML, Bruker TDF, vendor conversion)?

Pick a client above and copy the generated config. Cursor and VS Code also have a deep link when the server can run locally or remotely.

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This listing scores 55 (Fair). The formula is published on the methodology page.

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Mass Spectrometry Data (mzML, Bruker TDF, vendor conversion) MCP | MCP

Mass Spectrometry Data (mzML, Bruker TDF, vendor conversion) MCP Server

Name: Mass Spectrometry Data (mzML, Bruker TDF, vendor conversion) MCP Server
Author: k-dense-ai

MCP server for LC-MS data in mzML/mzMLb and Bruker timsTOF files; vendor formats via msconvert.

Tools Versions Alternatives

Registryk-dense-ai

55Fair

Install

~/Library/Application Support/Claude/claude_desktop_config.json

{
  "mcpServers": {
    "k-dense-ai-ms-data": {
      "command": "uvx",
      "args": [
        "labmcp-ms-data"
      ],
      "env": {
        "LABMCP_ADDRESS": "",
        "LABMCP_SIMULATE": "",
        "LABMCP_READ_ONLY": "",
        "LABMCP_LIMITS": ""
      }
    }
  }
}

Install guide

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Environment

Name	Required	Notes
LABMCP_ADDRESS	No	Instrument address, e.g. serial:///dev/ttyUSB0 or tcp://192.168.1.50:5025
LABMCP_SIMULATE	No	Set to 1 to use the built-in simulator (no hardware)
LABMCP_READ_ONLY	No	Set to 1 to disable all state-changing tools
LABMCP_LIMITS	No	Safety limit overrides, e.g. max_temperature_c=80

Mass Spectrometry Data (mzML, Bruker TDF, vendor conversion) MCP Server

Install

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