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Phylogenetic inference via IQ-TREE 3 — never returns a topology without its support
55FairInstall
~/Library/Application Support/Claude/claude_desktop_config.json
{
"mcpServers": {
"musharna-phylokit-mcp": {
"command": "uvx",
"args": [
"phylokit-mcp"
],
"env": {
"OMP_NUM_THREADS": "",
"MKL_NUM_THREADS": ""
}
}
}
}
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Environment
| Name | Required | Notes |
|---|
| OMP_NUM_THREADS | No | Pinned so inference is reproducible; overriding it makes IQ-TREE runs non-deterministic. |
| MKL_NUM_THREADS | No | Pinned alongside OMP_NUM_THREADS for the same reproducibility reason. |
Tools show up when the registry metadata or the repository README lists them. GitHub enrichment fills this in when a token is configured.
About
Phylogenetic inference via IQ-TREE 3 — never returns a topology without its support
FAQ
- What is phylokit-mcp?
- Phylogenetic inference via IQ-TREE 3 — never returns a topology without its support
- How do I install phylokit-mcp?
- Pick a client above and copy the generated config. Cursor and VS Code also have a deep link when the server can run locally or remotely.
- Is phylokit-mcp official?
- No. Registry-listed is not the same as vendor-official. Read the methodology for the difference.
- How is the trust score calculated?
- This listing scores 55 (Fair). The formula is published on the methodology page.
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