Skip to contentBioMCP-TS MCP Server — Install for Claude, Cursor & VS Code | MCPpediaBBioMCP-TS MCP Server
Biomedical MCP server: genes, variants, trials, literature, patents, optional SQL/R/biowasm tools.
36LimitedInstall
~/Library/Application Support/Claude/claude_desktop_config.json
{
"mcpServers": {
"yeyuan98-biomcp-ts": {
"command": "npx",
"args": [
"-y",
"biomcp@1.4.3"
],
"env": {
"ANALYSIS_BIOWASM": "",
"ANALYSIS_R": "",
"DB_TYPE": "",
"NCBI_API_KEY": "YOUR_NCBI_API_KEY",
"S2_API_KEY": "YOUR_S2_API_KEY",
"OPENFDA_API_KEY": "YOUR_OPENFDA_API_KEY",
"ONCOKB_TOKEN": "YOUR_ONCOKB_TOKEN",
"DISGENET_API_KEY": "YOUR_DISGENET_API_KEY"
}
}
}
}
Related servers
MCP server for interacting with the Supabase platform
Environment
| Name | Required | Notes |
|---|
| ANALYSIS_BIOWASM | No | Set to 1 to enable the samtools/bedtools/bcftools biowasm analysis tools |
| ANALYSIS_R | No | Set to 1 to enable the R/Bioconductor analysis tools (requires the webr peer dependency; use the pinned one-shot client command) |
| DB_TYPE | No | Set to mysql or sqlite to enable the read-only SQL database tools |
| NCBI_API_KEY | No | Higher NCBI E-utilities rate limits (3 -> 10 req/s) Secret. |
| S2_API_KEY | No | Higher Semantic Scholar rate limits Secret. |
| OPENFDA_API_KEY | No | Higher OpenFDA rate limits Secret. |
| ONCOKB_TOKEN | No | Required by the variant_oncokb tool (OncoKB annotations) Secret. |
| DISGENET_API_KEY | No | Required for DisGeNET disease-gene associations Secret. |
Tools show up when the registry metadata or the repository README lists them. GitHub enrichment fills this in when a token is configured.
About
BioMCP-TS — TypeScript biomedical MCP server (genes, variants, trials, literature, patents, R analysis)
FAQ
- What is BioMCP-TS?
- Biomedical MCP server: genes, variants, trials, literature, patents, optional SQL/R/biowasm tools.
- How do I install BioMCP-TS?
- Pick a client above and copy the generated config. Cursor and VS Code also have a deep link when the server can run locally or remotely.
- Is BioMCP-TS official?
- No. Registry-listed is not the same as vendor-official. Read the methodology for the difference.
- How is the trust score calculated?
- This listing scores 36 (Limited). The formula is published on the methodology page.
Reviews
0 published · no average
Sign in to review this server.
61
Good
SSH server management for agents, with per-server read-only and allowlist security modes
MCP Toolbox for Databases enables your agent to connect to your database.
ZAgent memory: working, episodic, semantic, procedural and core layers. Local SQLite, no account.
RNatural language interface designed for agentic applications to manage and search data in Redis.
HMake your agent's memory work like a brain. Hippo is long-term memory for coding agents.